Variant report
| Variant | rs13225477 |
|---|---|
| Chromosome Location | chr7:146953386-146953387 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs13221013 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs13224375 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs13230750 | 1.00[CEU][hapmap] |
| rs13242774 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13243107 | 0.87[EUR][1000 genomes] |
| rs1467329 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs1467330 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs17409790 | 0.92[EUR][1000 genomes] |
| rs34166730 | 0.95[EUR][1000 genomes] |
| rs34640787 | 0.92[EUR][1000 genomes] |
| rs35018500 | 0.92[EUR][1000 genomes] |
| rs35538572 | 0.92[EUR][1000 genomes] |
| rs35701811 | 0.92[EUR][1000 genomes] |
| rs35827268 | 0.92[EUR][1000 genomes] |
| rs36011986 | 0.92[EUR][1000 genomes] |
| rs36074712 | 0.92[EUR][1000 genomes] |
| rs62485027 | 0.95[EUR][1000 genomes] |
| rs62485028 | 0.95[EUR][1000 genomes] |
| rs62485029 | 0.92[EUR][1000 genomes] |
| rs62485030 | 0.92[EUR][1000 genomes] |
| rs62485031 | 0.92[EUR][1000 genomes] |
| rs62485032 | 0.92[EUR][1000 genomes] |
| rs62485034 | 0.92[EUR][1000 genomes] |
| rs62485036 | 0.92[EUR][1000 genomes] |
| rs62485038 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933033 | chr7:146720301-147081560 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033898 | chr7:146721499-147081768 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv889395 | chr7:146848251-146969389 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv889396 | chr7:146854133-147035067 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
