Variant report

Variant	rs13225513
Chromosome Location	chr3:29768274-29768275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1012107	0.91[EUR][1000 genomes]
rs1012108	0.91[EUR][1000 genomes]
rs11762100	0.90[EUR][1000 genomes]
rs12538699	0.91[EUR][1000 genomes]
rs1420167	0.91[EUR][1000 genomes]
rs1420168	0.91[EUR][1000 genomes]
rs1420169	0.91[EUR][1000 genomes]
rs1420170	0.91[EUR][1000 genomes]
rs1420171	0.81[EUR][1000 genomes]
rs1420172	0.81[EUR][1000 genomes]
rs2107598	0.91[EUR][1000 genomes]
rs2394621	0.81[EUR][1000 genomes]
rs34212633	0.90[EUR][1000 genomes]
rs34597458	0.90[EUR][1000 genomes]
rs35748713	0.90[EUR][1000 genomes]
rs35955969	0.90[EUR][1000 genomes]
rs36003653	0.90[EUR][1000 genomes]
rs3944117	0.91[EUR][1000 genomes]
rs4727359	0.91[EUR][1000 genomes]
rs4729350	0.91[EUR][1000 genomes]
rs62499531	0.90[EUR][1000 genomes]
rs62500784	0.90[EUR][1000 genomes]
rs62500785	0.90[EUR][1000 genomes]
rs62500787	0.89[EUR][1000 genomes]
rs6465578	0.91[EUR][1000 genomes]
rs6947667	0.90[EUR][1000 genomes]
rs6967969	0.90[EUR][1000 genomes]
rs7455701	0.91[EUR][1000 genomes]
rs7455772	0.84[EUR][1000 genomes]
rs7779114	0.90[EUR][1000 genomes]
rs7796040	0.91[EUR][1000 genomes]
rs7796251	0.86[EUR][1000 genomes]
rs7796739	0.91[EUR][1000 genomes]
rs9691916	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948388	chr3:29212935-30033043	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv998568	chr3:29268287-29981531	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536527	chr3:29268287-29981531	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1010530	chr3:29287169-30116109	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv834650	chr3:29673641-29816141	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:29745400-29782800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:29748400-29781200	Weak transcription	HSMM	muscle
3	chr3:29753600-29788000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:29754400-29772400	Weak transcription	Aorta	Aorta
5	chr3:29760400-29785800	Weak transcription	Adipose Nuclei	Adipose
6	chr3:29760600-29777800	Weak transcription	Fetal Lung	lung
7	chr3:29763600-29771800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:29765400-29789600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:29768200-29781600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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