Variant report

Variant	rs13226126
Chromosome Location	chr7:27940608-27940609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27936636..27940623-chr7:27942043..27944252,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10236987	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250533	0.97[EUR][1000 genomes]
rs10278615	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs12531234	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs13236531	0.94[EUR][1000 genomes]
rs56410344	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67583972	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7804500	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs7804617	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs7805497	0.91[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27923800-27941000	Weak transcription	Fetal Brain Female	brain
2	chr7:27926600-27956000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:27928400-27940800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:27930000-27949800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:27931800-27940800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:27931800-27941000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:27932000-27941000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:27932800-27941000	Weak transcription	Thymus	Thymus
9	chr7:27934400-27940800	Weak transcription	Aorta	Aorta
10	chr7:27934400-27940800	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:27934400-27940800	Weak transcription	Fetal Stomach	stomach
12	chr7:27934400-27940800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:27934600-27941000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr7:27934600-27941000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:27935600-27943200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:27935800-27940800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:27937200-27940800	Weak transcription	Fetal Kidney	kidney
18	chr7:27937200-27940800	Weak transcription	HSMMtube	muscle
19	chr7:27937400-27940800	Weak transcription	Fetal Lung	lung
20	chr7:27937400-27940800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr7:27937600-27940800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:27937600-27941000	Weak transcription	Colonic Mucosa	Colon
23	chr7:27937600-27941000	Weak transcription	Esophagus	oesophagus
24	chr7:27937600-27941000	Weak transcription	Fetal Intestine Large	intestine
25	chr7:27937600-27945600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:27937600-27945600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr7:27937600-27945600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:27937600-27945600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:27937600-27953800	Weak transcription	Right Ventricle	heart
30	chr7:27937600-27956200	Weak transcription	Gastric	stomach
31	chr7:27937800-27941000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr7:27937800-27945800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr7:27938200-27940800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr7:27938200-27942400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr7:27938200-27943600	Enhancers	Primary B cells from peripheral blood	blood
36	chr7:27938400-27940800	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr7:27938400-27941800	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr7:27938600-27940800	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr7:27939000-27941000	Weak transcription	Ovary	ovary
40	chr7:27939000-27945600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr7:27939000-27946400	Weak transcription	Brain Anterior Caudate	brain
42	chr7:27939200-27953000	Weak transcription	Left Ventricle	heart
43	chr7:27939400-27940800	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr7:27939400-27941000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr7:27939600-27940800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr7:27939600-27940800	Enhancers	Muscle Satellite Cultured Cells	--
47	chr7:27939600-27940800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr7:27939600-27940800	Weak transcription	Colon Smooth Muscle	Colon
49	chr7:27939600-27941000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr7:27939600-27941000	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links