Variant report

Variant	rs13226380
Chromosome Location	chr7:16628338-16628339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11764348	1.00[AFR][1000 genomes]
rs11768617	1.00[EUR][1000 genomes]
rs13246772	1.00[AFR][1000 genomes]
rs17169562	0.96[EUR][1000 genomes]
rs4311571	1.00[AFR][1000 genomes]
rs71540768	1.00[AFR][1000 genomes]
rs71540769	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv830912	chr7:16623196-16791974	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16622200-16635000	Weak transcription	K562	blood
2	chr7:16624000-16645600	Weak transcription	Gastric	stomach
3	chr7:16626000-16638000	Weak transcription	Fetal Stomach	stomach
4	chr7:16626400-16628600	Enhancers	Fetal Brain Male	brain
5	chr7:16626400-16639400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:16626600-16637800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:16626800-16630600	Enhancers	Fetal Heart	heart
8	chr7:16627000-16637800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:16627400-16628400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:16627400-16633800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:16627600-16635200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:16627800-16628400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr7:16627800-16633800	Weak transcription	Osteobl	bone
14	chr7:16627800-16637800	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:16627800-16639400	Weak transcription	Brain Germinal Matrix	brain
16	chr7:16627800-16640200	Weak transcription	Fetal Brain Female	brain
17	chr7:16627800-16640200	Weak transcription	Right Ventricle	heart
18	chr7:16627800-16654200	Weak transcription	Brain Angular Gyrus	brain
19	chr7:16628000-16628400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr7:16628000-16629200	Weak transcription	Right Atrium	heart
21	chr7:16628000-16637800	Weak transcription	Adipose Nuclei	Adipose
22	chr7:16628200-16639000	Weak transcription	Left Ventricle	heart

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