Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10273733	0.84[EUR][1000 genomes]
rs10274041	0.84[EUR][1000 genomes]
rs11771278	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2178497	0.85[EUR][1000 genomes]
rs2248465	0.88[ASN][1000 genomes]
rs2293658	0.85[EUR][1000 genomes]
rs2395907	0.84[EUR][1000 genomes]
rs2701678	0.91[ASN][1000 genomes]
rs2701679	0.91[ASN][1000 genomes]
rs2701684	0.89[ASN][1000 genomes]
rs2701685	0.89[ASN][1000 genomes]
rs2712227	0.86[ASN][1000 genomes]
rs2712228	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2712229	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2808	0.84[EUR][1000 genomes]
rs2894475	0.84[EUR][1000 genomes]
rs3779494	0.82[EUR][1000 genomes]
rs3801944	0.84[EUR][1000 genomes]
rs4330613	0.84[ASN][1000 genomes]
rs7793613	0.82[EUR][1000 genomes]
rs7806835	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392179	chr4:89311782-89574141	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv461575	chr4:89477002-89567767	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv594805	chr4:89477002-89567767	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89543400-89568200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr4:89545200-89566800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:89552400-89567000	Weak transcription	NHEK	skin
4	chr4:89552400-89576200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:89552600-89564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:89554400-89571000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:89555400-89560800	Weak transcription	Lung	lung
8	chr4:89555800-89573400	Weak transcription	Thymus	Thymus
9	chr4:89556000-89562200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:89556000-89566800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:89556400-89565400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:89558400-89570200	Weak transcription	Left Ventricle	heart

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