Variant report

Variant	rs13228980
Chromosome Location	chr7:150968246-150968247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150964684..150966392-chr7:150966406..150968425,2	MCF-7	breast:
2	chr7:150963840..150966297-chr7:150967879..150970876,2	MCF-7	breast:
3	chr7:150965804..150968803-chr7:150979702..150982006,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12533535	1.00[ASN][1000 genomes]
rs12536027	1.00[ASN][1000 genomes]
rs13230325	1.00[ASN][1000 genomes]
rs13244540	1.00[ASN][1000 genomes]
rs35102612	1.00[ASN][1000 genomes]
rs35159986	1.00[ASN][1000 genomes]
rs35545989	1.00[ASN][1000 genomes]
rs35637117	1.00[ASN][1000 genomes]
rs428859	1.00[ASN][1000 genomes]
rs432519	1.00[ASN][1000 genomes]
rs439031	1.00[ASN][1000 genomes]
rs445933	1.00[ASN][1000 genomes]
rs73169681	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	nsv465216	chr7:150951819-150991795	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv609036	chr7:150951819-150991795	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1023436	chr7:150967147-150997692	Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150950400-150973400	Weak transcription	Brain Substantia Nigra	brain
2	chr7:150951000-150969800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:150951000-150970800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:150959000-150969400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:150959200-150969800	Weak transcription	Right Atrium	heart
6	chr7:150959600-150969000	Weak transcription	Fetal Lung	lung
7	chr7:150959600-150972800	Weak transcription	Ovary	ovary
8	chr7:150960000-150969200	Weak transcription	Right Ventricle	heart
9	chr7:150960200-150973200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:150961400-150969000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:150963000-150969000	Weak transcription	Fetal Brain Male	brain
12	chr7:150963200-150969400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr7:150963600-150969400	Weak transcription	Esophagus	oesophagus
14	chr7:150964000-150972000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:150965400-150969200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:150965600-150968400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:150965800-150968600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr7:150966200-150969000	Weak transcription	Fetal Intestine Small	intestine
19	chr7:150966200-150969400	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:150966400-150968800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr7:150966600-150969000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:150966800-150969200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:150967000-150968400	Strong transcription	Brain Angular Gyrus	brain
24	chr7:150967200-150968400	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr7:150967400-150973000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr7:150967600-150968400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr7:150967600-150968400	Enhancers	Pancreas	Pancrea
28	chr7:150967600-150970000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:150967800-150969400	Weak transcription	Fetal Stomach	stomach
30	chr7:150967800-150969800	Enhancers	Fetal Intestine Large	intestine
31	chr7:150967800-150972800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr7:150968000-150968400	Strong transcription	Brain Germinal Matrix	brain
33	chr7:150968000-150971000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:150968000-150972600	Weak transcription	Brain Hippocampus Middle	brain
35	chr7:150968000-150974000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:150968200-150968600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr7:150968200-150968800	Enhancers	Primary B cells from cord blood	blood
38	chr7:150968200-150968800	Enhancers	Lung	lung
39	chr7:150968200-150969000	Weak transcription	Brain Anterior Caudate	brain
40	chr7:150968200-150969400	Weak transcription	Fetal Brain Female	brain
41	chr7:150968200-150970200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:150968200-150970400	Enhancers	Spleen	Spleen
43	chr7:150968200-150971800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr7:150968200-150973800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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