Variant report

Variant	rs13229046
Chromosome Location	chr7:65656936-65656937
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11974219	0.86[ASN][1000 genomes]
rs11974264	0.86[ASN][1000 genomes]
rs13225383	0.81[ASN][1000 genomes]
rs1540651	0.87[ASN][1000 genomes]
rs1565531	0.81[ASN][1000 genomes]
rs6958484	0.80[ASN][1000 genomes]
rs7801282	0.82[ASN][1000 genomes]
rs875971	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1021186	chr7:65492601-65663438	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs13229046	RP4-756H11.3	cis	Thyroid	GTEx
rs13229046	RP4-756H11.3	cis	Artery Tibial	GTEx
rs13229046	GS1-124K5.4	cis	Esophagus Mucosa	GTEx
rs13229046	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs13229046	GS1-124K5.4	cis	Artery Aorta	GTEx
rs13229046	RP4-756H11.3	cis	Adipose Subcutaneous	GTEx
rs13229046	RP4-756H11.3	cis	Nerve Tibial	GTEx
rs13229046	RP4-756H11.3	cis	Muscle Skeletal	GTEx
rs13229046	RP4-756H11.3	cis	Esophagus Mucosa	GTEx
rs13229046	RP4-756H11.3	cis	Artery Aorta	GTEx
rs13229046	RP4-756H11.3	cis	Heart Left Ventricle	GTEx
rs13229046	RP4-756H11.3	cis	lung	GTEx
rs13229046	RP4-756H11.3	cis	Esophagus Muscularis	GTEx
rs13229046	GTF2IRD1P1	cis	Thyroid	GTEx
rs13229046	RP4-756H11.3	cis	Whole Blood	GTEx
rs13229046	RNU6-96P	cis	Thyroid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65652800-65660600	Weak transcription	Spleen	Spleen
2	chr7:65655800-65657800	Weak transcription	HepG2	liver
3	chr7:65656200-65660600	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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