Variant report

Variant	rs13230811
Chromosome Location	chr7:27356039-27356040
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11979443	1.00[ASN][1000 genomes]
rs12700799	0.89[YRI][hapmap]
rs12700800	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17427686	1.00[JPT][hapmap]
rs17438465	1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs17438500	1.00[JPT][hapmap]
rs17471793	1.00[JPT][hapmap]
rs17473900	1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107064	1.00[JPT][hapmap]
rs2391415	1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs28398483	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28398498	1.00[JPT][hapmap]
rs6953618	1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777464	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
4	nsv887893	chr7:27326739-27380936	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1026851	chr7:27344799-27370551	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27352400-27357000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:27353400-27356400	Enhancers	Fetal Lung	lung
3	chr7:27354000-27357400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:27354200-27357000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:27355800-27356200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:27355800-27356200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:27355800-27356400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr7:27355800-27356400	Enhancers	Adipose Nuclei	Adipose
9	chr7:27355800-27356400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr7:27355800-27356600	Enhancers	Osteobl	bone
11	chr7:27356000-27356200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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