Variant report

Variant	rs13232393
Chromosome Location	chr7:66398394-66398395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:66392066..66395575-chr7:66397284..66400489,4	K562	blood:
2	chr7:66109569..66111669-chr7:66397227..66398800,2	K562	blood:
3	chr7:66390822..66393566-chr7:66398113..66400067,2	K562	blood:
4	chr7:66393271..66394873-chr7:66396881..66398631,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12698542	0.90[AFR][1000 genomes]
rs12698551	1.00[ASN][1000 genomes]
rs13228779	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13229468	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13233569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13235282	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13236129	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13237544	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13238478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238612	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13246227	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1573944	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1880644	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1922723	0.90[AFR][1000 genomes]
rs2141924	0.90[AFR][1000 genomes]
rs2178742	0.90[AFR][1000 genomes]
rs2659903	0.90[AFR][1000 genomes]
rs2707823	0.90[AFR][1000 genomes]
rs2707826	0.82[AFR][1000 genomes]
rs34162778	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs34314366	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34423980	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34559676	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs34785430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34816289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35043782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35111158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35315599	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs35390465	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35481333	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs35508430	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35624856	0.88[ASN][1000 genomes]
rs35676956	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35821254	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35851021	0.88[ASN][1000 genomes]
rs35876551	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36059333	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457208	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55849324	0.91[ASN][1000 genomes]
rs55889925	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56006261	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56235846	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56675463	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs59308022	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs60201031	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66510832	0.83[ASN][1000 genomes]
rs67319329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71535634	0.85[ASN][1000 genomes]
rs71535635	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs71563136	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs869249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876743	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs13232393	ASL	Cis_1M	lymphoblastoid	RTeQTL
rs13232393	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs13232393	RP4-756H11.3	cis	lung	GTEx
rs13232393	VKORC1L1	Cis_1M	lymphoblastoid	RTeQTL
rs13232393	GUSB	cis	Whole Blood	GTEx
rs13232393	ASL	cis	multi-tissue	Pritchard

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66387600-66407200	Weak transcription	NH-A	brain
2	chr7:66387600-66409800	Weak transcription	Fetal Kidney	kidney
3	chr7:66387600-66428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:66388200-66406800	Weak transcription	NHLF	lung
5	chr7:66388400-66401200	Weak transcription	Fetal Lung	lung
6	chr7:66388400-66406800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:66388400-66406800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:66388600-66403600	Weak transcription	HUVEC	blood vessel
9	chr7:66388600-66403800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:66388600-66406800	Weak transcription	NHDF-Ad	bronchial
11	chr7:66389000-66406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:66389200-66398400	Weak transcription	Brain Angular Gyrus	brain
13	chr7:66389400-66405400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:66390200-66398400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:66390600-66403800	Weak transcription	HSMM	muscle
16	chr7:66391200-66409800	Weak transcription	Brain Germinal Matrix	brain
17	chr7:66392600-66403400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr7:66393000-66399800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:66393000-66402400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:66393000-66403600	Weak transcription	HepG2	liver
21	chr7:66393000-66406600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr7:66393400-66411800	Weak transcription	Stomach Mucosa	stomach
23	chr7:66393800-66422200	Weak transcription	Fetal Heart	heart
24	chr7:66394000-66399400	Weak transcription	GM12878-XiMat	blood
25	chr7:66394000-66403600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:66394200-66398400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:66394200-66402000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr7:66394200-66403800	Weak transcription	Hela-S3	cervix
29	chr7:66394200-66405400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr7:66394200-66408000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr7:66394400-66405400	Weak transcription	HMEC	breast
32	chr7:66394400-66405600	Weak transcription	Colonic Mucosa	Colon
33	chr7:66395000-66404000	Weak transcription	NHEK	skin
34	chr7:66395400-66404000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:66395400-66406800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:66395400-66406800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:66395600-66402400	Weak transcription	Dnd41	blood
38	chr7:66395600-66403600	Weak transcription	A549	lung
39	chr7:66395600-66404600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:66395600-66405400	Weak transcription	Right Atrium	heart
41	chr7:66395600-66407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr7:66395800-66398800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr7:66395800-66400400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:66395800-66400400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:66395800-66404000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:66395800-66405400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr7:66395800-66406400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr7:66395800-66406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:66395800-66406800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr7:66395800-66406800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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