Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10246886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs262361	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs262362	0.87[ASN][1000 genomes]
rs262363	0.85[ASN][1000 genomes]
rs262365	1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs262366	1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs262367	0.87[ASN][1000 genomes]
rs262370	0.87[ASN][1000 genomes]
rs262372	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs262373	0.87[ASN][1000 genomes]
rs264369	0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs264370	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs264371	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs264372	1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs264373	0.87[ASN][1000 genomes]
rs264374	0.87[ASN][1000 genomes]
rs264376	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs39334	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs6465937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7808351	1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13233227	ACTL6B	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103446200-103452000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:103449200-103451000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:103449200-103451200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:103449200-103451200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr7:103449200-103451200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:103449200-103451200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:103449600-103451000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:103449800-103451200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:103450000-103452200	Enhancers	Liver	Liver
10	chr7:103450200-103450800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:103450200-103451600	Flanking Active TSS	K562	blood
12	chr7:103450200-103452800	Enhancers	Fetal Kidney	kidney
13	chr7:103450400-103451200	Flanking Active TSS	HepG2	liver
14	chr7:103450600-103450800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:103450600-103451200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:103450600-103452400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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