Variant report
Variant | rs13233728 |
---|---|
Chromosome Location | chr7:39141601-39141602 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10081387 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
rs10254198 | 0.85[EUR][1000 genomes] |
rs13224070 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs13242821 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17431633 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs34126088 | 1.00[AFR][1000 genomes] |
rs34244073 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs34661097 | 1.00[AFR][1000 genomes] |
rs35304721 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs71536625 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs71536628 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs71536629 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1024142 | chr7:38978728-39300444 | Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv887968 | chr7:39123165-39198960 | Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv830968 | chr7:39127531-39283543 | Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv428163 | chr7:39127531-39283543 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |