Variant report

Variant	rs13235229
Chromosome Location	chr7:65918977-65918978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv482441	chr7:65885824-66061788	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	esv1802195	chr7:65886451-65945211	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1027068	chr7:65901543-65991211	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	esv3447484	chr7:65909457-66033145	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv966833	chr7:65917499-65932080	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65879000-65922200	Weak transcription	Small Intestine	intestine
2	chr7:65879200-65924600	Weak transcription	Brain Anterior Caudate	brain
3	chr7:65879200-65939800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:65879200-65946000	Weak transcription	NHEK	skin
5	chr7:65879200-65957600	Weak transcription	Psoas Muscle	Psoas
6	chr7:65879400-65921000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:65879400-65921400	Weak transcription	Fetal Kidney	kidney
8	chr7:65879600-65919000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr7:65879600-65920400	Weak transcription	Primary B cells from cord blood	blood
10	chr7:65884000-65919600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:65886600-65920400	Weak transcription	Right Ventricle	heart
12	chr7:65887000-65924600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:65887000-65924600	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:65889200-65939600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:65890000-65928800	Weak transcription	Adipose Nuclei	Adipose
16	chr7:65891600-65939000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr7:65892000-65931800	Weak transcription	Ovary	ovary
18	chr7:65894200-65939200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr7:65898200-65938200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:65903000-65922000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:65904400-65939000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr7:65905600-65938600	Weak transcription	Pancreas	Pancrea
23	chr7:65905600-65957600	Weak transcription	Fetal Lung	lung
24	chr7:65906000-65940200	Weak transcription	Fetal Intestine Large	intestine
25	chr7:65906200-65938600	Weak transcription	Lung	lung
26	chr7:65908000-65923600	Weak transcription	K562	blood
27	chr7:65909600-65919200	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr7:65909600-65919400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr7:65909600-65927400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr7:65910000-65938400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:65910200-65940000	Weak transcription	Placenta	Placenta
32	chr7:65911400-65957800	Weak transcription	Aorta	Aorta
33	chr7:65911800-65938600	Weak transcription	Fetal Intestine Small	intestine
34	chr7:65912000-65944000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:65912600-65939000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:65913000-65946800	Weak transcription	Esophagus	oesophagus
37	chr7:65913400-65924400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr7:65914000-65939200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr7:65914200-65939000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr7:65914400-65938200	Weak transcription	Primary T cells from cord blood	blood
41	chr7:65914600-65919200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:65914600-65920000	Weak transcription	GM12878-XiMat	blood
43	chr7:65914600-65923000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:65914600-65924600	Weak transcription	Left Ventricle	heart
45	chr7:65914600-65927400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:65914600-65938600	Weak transcription	Fetal Stomach	stomach
47	chr7:65914600-65938800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:65915200-65939000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr7:65915800-65954200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr7:65917000-65957800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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