Variant report

Variant	rs13235449
Chromosome Location	chr7:146040767-146040768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1005386	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs1005387	0.80[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap]
rs1005388	0.87[ASW][hapmap];0.80[CEU][hapmap];0.86[CHB][hapmap]
rs12703801	0.86[CHB][hapmap];0.88[CHD][hapmap]
rs12703803	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs13223832	0.86[CHB][hapmap]
rs17170057	0.86[CHB][hapmap]
rs17170069	0.86[CHB][hapmap]
rs1860684	0.86[CHB][hapmap]
rs2109696	0.95[AFR][1000 genomes]
rs2159674	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs2191701	0.84[CHB][hapmap]
rs34079621	1.00[ASW][hapmap];0.83[AFR][1000 genomes]
rs6464757	0.86[CHB][hapmap]
rs6946112	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs6948846	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs6969819	0.86[CHB][hapmap]
rs7788551	0.85[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap]
rs7800227	0.93[CHB][hapmap];0.82[CHD][hapmap]
rs7806058	0.80[CHB][hapmap]
rs7812290	0.86[CHB][hapmap]
rs802509	0.80[CHB][hapmap]
rs986264	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv933136	chr7:145995920-146076835	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv889388	chr7:145998111-146082957	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv524528	chr7:145998111-146086322	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv889389	chr7:145998111-146121539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv934010	chr7:146006146-146076835	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv933530	chr7:146016273-146076835	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv608929	chr7:146020936-146082957	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv608930	chr7:146025509-146081452	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv971189	chr7:146037836-146042438	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146040400-146040800	Enhancers	Fetal Brain Female	brain
2	chr7:146040400-146041600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:146040400-146041600	Weak transcription	Fetal Brain Male	brain

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