Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:8416687..8418830-chr9:8420950..8422628,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1021719	0.91[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap]
rs10815842	0.90[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs10815867	0.85[JPT][hapmap]
rs10815868	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10815869	0.91[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.83[ASN][1000 genomes]
rs10815871	0.81[ASN][1000 genomes]
rs10977088	0.90[JPT][hapmap]
rs12554442	0.91[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs1500328	0.82[CHB][hapmap]
rs1535676	0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1535677	0.81[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs16927841	0.84[JPT][hapmap]
rs2031215	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2031218	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2381796	0.90[JPT][hapmap];0.89[LWK][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs4742492	0.86[CHB][hapmap]
rs6477304	0.83[ASN][1000 genomes]
rs6477305	0.82[ASN][1000 genomes]
rs6477306	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs68173595	0.89[AFR][1000 genomes]
rs7031533	0.85[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs7862508	0.90[AFR][1000 genomes]
rs7869156	0.85[ASN][1000 genomes]
rs942176	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv613287	chr9:8408453-8422302	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8389600-8451000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:8394000-8424400	Weak transcription	Fetal Lung	lung
3	chr9:8402600-8448800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:8402800-8438000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:8405800-8438000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:8408200-8429200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:8410600-8436800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:8415400-8435800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:8418200-8476000	Weak transcription	Fetal Brain Male	brain
10	chr9:8419200-8491000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:8419800-8447600	Weak transcription	Fetal Brain Female	brain
12	chr9:8420200-8425400	Weak transcription	Brain Substantia Nigra	brain
13	chr9:8420200-8436800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:8420600-8466000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:8420600-8557600	Weak transcription	Aorta	Aorta
16	chr9:8421200-8432200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:8421400-8456400	Weak transcription	Ovary	ovary
18	chr9:8422000-8464800	Weak transcription	Brain Germinal Matrix	brain

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