Variant report

Variant	rs13236690
Chromosome Location	chr7:5183986-5183987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MMD2-3	chr7:5183878-5184177	NR_034163

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10239375	0.93[ASN][1000 genomes]
rs13438588	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13438646	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28551043	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6463288	0.86[ASN][1000 genomes]
rs73042232	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530968	chr7:4572250-5418004	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1031697	chr7:4677463-5241790	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv538704	chr7:4677463-5241790	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
5	nsv1029430	chr7:5053887-5223583	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1032880	chr7:5066181-5205932	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1030384	chr7:5066181-5210555	Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv530979	chr7:5101631-5864814	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
9	nsv1031007	chr7:5101766-5262695	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv916396	chr7:5128917-5370805	Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv1027026	chr7:5132597-5188557	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv605982	chr7:5133219-5222956	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv523630	chr7:5144105-5198328	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv530981	chr7:5157150-5920006	Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
15	nsv433016	chr7:5157617-5215853	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	esv2762643	chr7:5172994-5216265	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5182800-5184000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
2	chr7:5182800-5184000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:5182800-5184200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr7:5182800-5184600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:5183200-5184200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr7:5183200-5184200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
7	chr7:5183400-5184200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
8	chr7:5183400-5184200	Active TSS	Brain Anterior Caudate	brain
9	chr7:5183400-5184400	Enhancers	Primary B cells from cord blood	blood
10	chr7:5183400-5184400	Active TSS	Brain Cingulate Gyrus	brain
11	chr7:5183400-5184400	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr7:5183400-5184400	Active TSS	Hela-S3	cervix
13	chr7:5183600-5184000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr7:5183600-5184000	Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr7:5183600-5184200	Active TSS	Primary T cells from cord blood	blood
16	chr7:5183800-5184000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:5183800-5184000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
18	chr7:5183800-5184000	Active TSS	Primary hematopoietic stem cells	blood
19	chr7:5183800-5184000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:5183800-5184000	Enhancers	HMEC	breast
21	chr7:5183800-5184000	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
22	chr7:5183800-5184200	Flanking Active TSS	Primary B cells from peripheral blood	blood
23	chr7:5183800-5184200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr7:5183800-5184200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:5183800-5184200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr7:5183800-5184200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:5183800-5184200	Active TSS	Brain Hippocampus Middle	brain
28	chr7:5183800-5184200	Bivalent Enhancer	Fetal Intestine Large	intestine
29	chr7:5183800-5184200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr7:5183800-5184200	Flanking Active TSS	Fetal Thymus	thymus
31	chr7:5183800-5184200	Active TSS	HepG2	liver
32	chr7:5183800-5184400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr7:5183800-5184400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:5183800-5184400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:5183800-5184400	Enhancers	Spleen	Spleen
36	chr7:5183800-5184600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:5183800-5184600	Flanking Active TSS	GM12878-XiMat	blood

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