Variant report

Variant	rs13236880
Chromosome Location	chr7:79770598-79770599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12706644	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13227898	0.89[AMR][1000 genomes]
rs13228071	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67077197	0.89[AMR][1000 genomes]
rs73149535	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79765600-79775200	Weak transcription	Esophagus	oesophagus
2	chr7:79766000-79772600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr7:79766400-79770600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:79766400-79774200	Weak transcription	Right Atrium	heart
5	chr7:79766400-79775000	Weak transcription	NH-A	brain
6	chr7:79766400-79775200	Weak transcription	Left Ventricle	heart
7	chr7:79767200-79775200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:79767200-79775200	Weak transcription	Fetal Muscle Leg	muscle
9	chr7:79768400-79774200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:79768400-79775200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:79768400-79775200	Weak transcription	Aorta	Aorta
12	chr7:79768600-79770600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:79768600-79771600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:79768600-79772200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:79768600-79780400	Weak transcription	Stomach Mucosa	stomach
16	chr7:79768800-79770600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:79768800-79770600	Weak transcription	Fetal Brain Male	brain
18	chr7:79768800-79770800	Weak transcription	Brain Angular Gyrus	brain
19	chr7:79768800-79771000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:79768800-79771200	Weak transcription	Brain Anterior Caudate	brain
21	chr7:79768800-79771800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:79768800-79772200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:79768800-79772400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:79768800-79773000	Weak transcription	Fetal Stomach	stomach
25	chr7:79768800-79773200	Weak transcription	NHLF	lung
26	chr7:79768800-79773800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:79768800-79774200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:79768800-79774200	Weak transcription	Osteobl	bone
29	chr7:79768800-79774800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:79768800-79775000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:79768800-79775200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:79768800-79775200	Weak transcription	Ovary	ovary
33	chr7:79768800-79780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:79768800-79780200	Weak transcription	Small Intestine	intestine
35	chr7:79769000-79770600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:79769000-79770600	Weak transcription	Fetal Lung	lung
37	chr7:79769000-79771000	Weak transcription	Fetal Kidney	kidney
38	chr7:79769000-79771000	Enhancers	A549	lung
39	chr7:79769000-79771200	Weak transcription	Colon Smooth Muscle	Colon
40	chr7:79769000-79771600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr7:79769000-79772200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:79769000-79772200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:79769000-79773200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:79769000-79773600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:79769000-79774200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:79769000-79775000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr7:79769000-79775000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr7:79769000-79775000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:79769000-79775000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr7:79769000-79775200	Enhancers	Adipose Nuclei	Adipose

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