Variant report

Variant	rs13237396
Chromosome Location	chr7:78856671-78856672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10225262	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10234403	0.83[EUR][1000 genomes]
rs10235211	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10270764	0.83[EUR][1000 genomes]
rs10273845	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10480716	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10953797	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10953806	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10953812	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10953821	0.83[EUR][1000 genomes]
rs10953826	0.82[EUR][1000 genomes]
rs10953827	0.81[EUR][1000 genomes]
rs11532779	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11977493	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12111592	0.81[EUR][1000 genomes]
rs12111980	0.81[EUR][1000 genomes]
rs12534590	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12539220	0.83[EUR][1000 genomes]
rs12540324	0.82[EUR][1000 genomes]
rs12706101	0.81[EUR][1000 genomes]
rs12706102	0.81[EUR][1000 genomes]
rs13222018	0.81[EUR][1000 genomes]
rs13224739	0.83[EUR][1000 genomes]
rs13237397	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13240307	0.83[EUR][1000 genomes]
rs13243756	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1406158	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1406159	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1528271	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1528272	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1528273	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1528274	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1528280	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1528281	0.83[EUR][1000 genomes]
rs1918936	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1918937	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1918938	0.83[EUR][1000 genomes]
rs1918939	0.83[EUR][1000 genomes]
rs2058393	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159709	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2364902	0.83[EUR][1000 genomes]
rs28757842	0.93[AMR][1000 genomes]
rs34066812	0.83[EUR][1000 genomes]
rs34263368	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4730746	0.83[EUR][1000 genomes]
rs4730747	0.83[EUR][1000 genomes]
rs60960798	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6946286	0.83[EUR][1000 genomes]
rs6947782	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6950549	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6952164	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6953483	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6968269	0.96[AMR][1000 genomes]
rs71531164	0.83[EUR][1000 genomes]
rs717067	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7455235	0.94[AMR][1000 genomes]
rs7781907	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7805028	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9886146	0.81[EUR][1000 genomes]
rs9886330	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv888510	chr7:78742376-78865618	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv437551	chr7:78796910-78856704	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2757230	chr7:78801388-78887925	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2759539	chr7:78801388-78887925	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv437552	chr7:78801909-78856704	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv437554	chr7:78801909-78856704	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv2761161	chr7:78805299-78857007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv437988	chr7:78806100-78910974	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1017352	chr7:78807175-78858690	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
13	nsv538989	chr7:78807175-78858690	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
14	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv437555	chr7:78827136-78856704	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78855400-78858400	Weak transcription	Fetal Intestine Small	intestine
2	chr7:78855800-78857200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:78856000-78856800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:78856000-78857000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:78856000-78857200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:78856200-78857000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:78856200-78857400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:78856400-78856800	Enhancers	HepG2	liver
9	chr7:78856400-78857000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:78856400-78857000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:78856400-78857200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:78856600-78857200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:78856600-78857800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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