Variant report

Variant	rs13238363
Chromosome Location	chr7:26359666-26359667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26344840..26346808-chr7:26358431..26360772,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12700722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12700724	1.00[EUR][1000 genomes]
rs12700725	1.00[EUR][1000 genomes]
rs13224478	1.00[EUR][1000 genomes]
rs13247860	1.00[EUR][1000 genomes]
rs17153435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2391268	1.00[EUR][1000 genomes]
rs34579559	1.00[EUR][1000 genomes]
rs34947105	1.00[EUR][1000 genomes]
rs35641831	1.00[EUR][1000 genomes]
rs35701416	1.00[EUR][1000 genomes]
rs35735803	1.00[EUR][1000 genomes]
rs35934277	1.00[EUR][1000 genomes]
rs6974050	0.81[AFR][1000 genomes]
rs71521759	1.00[EUR][1000 genomes]
rs71554052	1.00[EUR][1000 genomes]
rs7794635	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2761313	chr7:26340970-26389772	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26335200-26386400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:26345600-26386200	Weak transcription	Thymus	Thymus
3	chr7:26345800-26375600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:26346000-26368200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr7:26346000-26373800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr7:26346800-26360600	Weak transcription	Fetal Thymus	thymus
7	chr7:26349800-26360400	Weak transcription	HepG2	liver
8	chr7:26349800-26360600	Weak transcription	Primary T cells from cord blood	blood
9	chr7:26351400-26360600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr7:26353600-26368000	Weak transcription	Spleen	Spleen
11	chr7:26355400-26360800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:26356600-26361400	Weak transcription	Pancreas	Pancrea
13	chr7:26358000-26359800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:26358200-26359800	Enhancers	Primary B cells from peripheral blood	blood
15	chr7:26358600-26359800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:26358600-26360000	Enhancers	Primary B cells from cord blood	blood
17	chr7:26358800-26366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:26359000-26360000	Enhancers	Primary hematopoietic stem cells	blood
19	chr7:26359200-26360400	Weak transcription	Liver	Liver
20	chr7:26359200-26360600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:26359200-26360600	Weak transcription	Fetal Kidney	kidney
22	chr7:26359200-26367800	Weak transcription	GM12878-XiMat	blood
23	chr7:26359200-26369400	Weak transcription	K562	blood
24	chr7:26359200-26370200	Weak transcription	Adipose Nuclei	Adipose
25	chr7:26359400-26359800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr7:26359400-26360600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr7:26359600-26360200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr7:26359600-26360400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr7:26359600-26360400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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