The 2.0 version of rSNPBase
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Variant report
Variant
rs13240272
Chromosome Location
chr7:126690814-126690815
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
No data
No data
No data
No data
Extended variants information (count: 3 )
Associated traits (count: 1 )
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs11563716
1.00[ASW][hapmap]
rs11563748
1.00[CEU][hapmap]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv831121
chr7:126593363-126774413
Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA
6 gene(s)
inside rSNPs
diseases
mRNA abundance (count:1)
SNP
Gene
Cis/trans
Tissue
Source
rs13240272
FSCN3
cis
cerebellum
SCAN
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links