Variant report
| Variant | rs13240291 |
|---|---|
| Chromosome Location | chr7:12118587-12118588 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1006869 | 0.93[EUR][1000 genomes] |
| rs12374883 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12672078 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12699306 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13241222 | 1.00[ASN][1000 genomes] |
| rs17581664 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17589864 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17590151 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17647913 | 0.95[ASN][1000 genomes] |
| rs34333793 | 0.89[ASN][1000 genomes] |
| rs35248271 | 0.82[ASN][1000 genomes] |
| rs36014669 | 0.82[ASN][1000 genomes] |
| rs4721023 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4721024 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4721025 | 0.95[ASN][1000 genomes] |
| rs4721026 | 1.00[ASN][1000 genomes] |
| rs4721027 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs62433218 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62433247 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62433250 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv606199 | chr7:11506143-12486659 | Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv887614 | chr7:11778424-12211198 | Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv830906 | chr7:12001764-12177869 | Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1023608 | chr7:12064114-12247520 | Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:12115600-12130400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr7:12115800-12119000 | Weak transcription | H1 Cell Line | embryonic stem cell |
