Variant report

Variant	rs13246065
Chromosome Location	chr7:136961439-136961440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs322239	0.85[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs322322	1.00[TSI][hapmap]
rs62487108	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs706557	0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv889238	chr7:136915059-136989606	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889239	chr7:136923730-136994013	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136938200-136980600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:136952200-136971000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:136960800-136961600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:136961000-136961600	Active TSS	Brain Cingulate Gyrus	brain
5	chr7:136961000-136961600	Flanking Active TSS	Brain Substantia Nigra	brain
6	chr7:136961000-136962600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:136961200-136961600	Flanking Active TSS	Brain Angular Gyrus	brain
8	chr7:136961200-136966000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:136961400-136961600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr7:136961400-136961800	Enhancers	Brain Hippocampus Middle	brain
11	chr7:136961400-136962200	Enhancers	Brain Anterior Caudate	brain
12	chr7:136961400-136965800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:136961400-136973600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:136961400-136980600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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