Variant report

Variant	rs13248962
Chromosome Location	chr8:95724918-95724919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95651278..95654428-chr8:95723706..95727705,5	MCF-7	breast:
2	chr8:95623526..95627073-chr8:95722461..95725966,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104413	Chromatin interaction
ENSG00000261437	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv511392	chr8:95721252-95732766	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv611751	chr8:95721435-95742394	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv512056	chr8:95724844-95728443	Weak transcription Enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95712600-95728800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:95713000-95730600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:95714400-95731400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:95716200-95730800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:95717200-95730800	Weak transcription	Fetal Intestine Small	intestine
6	chr8:95718400-95731400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:95718600-95726200	Weak transcription	NHEK	skin
8	chr8:95718800-95731200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:95719200-95730800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:95719400-95730400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:95719400-95730800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:95719400-95731000	Weak transcription	Placenta	Placenta
13	chr8:95719600-95726200	Weak transcription	HMEC	breast
14	chr8:95719600-95731000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr8:95719800-95726400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:95719800-95727000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:95719800-95727000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:95719800-95730400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:95720000-95731000	Weak transcription	Fetal Intestine Large	intestine
20	chr8:95720200-95731000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:95720200-95731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:95720400-95730800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:95720600-95726000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:95720800-95726200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:95723000-95731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:95724600-95731000	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links