Variant report

Variant	rs13250084
Chromosome Location	chr8:19476763-19476764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1105046	0.83[EUR][1000 genomes]
rs13248137	1.00[ASN][1000 genomes]
rs13261887	0.88[EUR][1000 genomes]
rs17128707	1.00[ASN][1000 genomes]
rs17408029	1.00[ASN][1000 genomes]
rs17480622	1.00[ASN][1000 genomes]
rs34267078	0.96[EUR][1000 genomes]
rs34453606	0.83[EUR][1000 genomes]
rs34520389	1.00[ASN][1000 genomes]
rs34561584	1.00[ASN][1000 genomes]
rs34632038	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59244617	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs59495894	1.00[ASN][1000 genomes]
rs60325517	1.00[ASN][1000 genomes]
rs61678332	1.00[ASN][1000 genomes]
rs6984585	0.83[EUR][1000 genomes]
rs6988797	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6988825	0.88[EUR][1000 genomes]
rs6992213	1.00[ASN][1000 genomes]
rs6997538	0.83[EUR][1000 genomes]
rs7003381	0.88[EUR][1000 genomes]
rs7815969	1.00[ASN][1000 genomes]
rs7840615	1.00[ASN][1000 genomes]
rs9987387	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv34007	chr8:19252602-19482098	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv890626	chr8:19383697-19483259	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv890627	chr8:19389865-19561997	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv610754	chr8:19419494-19525294	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1021575	chr8:19430653-19623452	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1025271	chr8:19435147-19574969	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1015448	chr8:19474715-19520367	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19445600-19481400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:19456200-19479600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:19466600-19477000	Weak transcription	Aorta	Aorta
4	chr8:19466600-19477000	Weak transcription	Fetal Lung	lung
5	chr8:19468000-19483400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr8:19472200-19481200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:19472600-19480000	Weak transcription	Primary T cells from cord blood	blood
8	chr8:19472800-19482400	Weak transcription	Spleen	Spleen
9	chr8:19473000-19481200	Weak transcription	Hela-S3	cervix
10	chr8:19473000-19481400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr8:19473000-19481800	Weak transcription	HUVEC	blood vessel
12	chr8:19473200-19483600	Enhancers	A549	lung
13	chr8:19474400-19478000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:19474400-19482400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:19475800-19481400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:19476200-19477400	Enhancers	Right Atrium	heart
17	chr8:19476400-19476800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:19476400-19477000	Enhancers	Primary B cells from cord blood	blood
19	chr8:19476400-19477200	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr8:19476400-19477200	Enhancers	Right Ventricle	heart
21	chr8:19476400-19478200	Enhancers	Left Ventricle	heart
22	chr8:19476400-19478200	Enhancers	Pancreas	Pancrea
23	chr8:19476600-19477000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:19476600-19477200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:19476600-19477400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:19476600-19479200	Enhancers	Ovary	ovary
27	chr8:19476600-19479800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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