Variant report

Variant	rs13250593
Chromosome Location	chr8:5158614-5158615
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10104304	0.87[EUR][1000 genomes]
rs11136851	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11780928	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11782756	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11783530	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11787485	0.90[AFR][1000 genomes]
rs12679623	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12681537	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13249114	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13249604	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13251656	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13275405	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13276499	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1420839	0.87[EUR][1000 genomes]
rs1420841	0.87[EUR][1000 genomes]
rs2111420	0.87[EUR][1000 genomes]
rs2111421	0.87[EUR][1000 genomes]
rs2193429	0.87[EUR][1000 genomes]
rs2216312	0.87[EUR][1000 genomes]
rs2407956	0.87[EUR][1000 genomes]
rs2407957	0.87[EUR][1000 genomes]
rs2407958	0.87[EUR][1000 genomes]
rs2407960	0.82[EUR][1000 genomes]
rs4270986	0.87[EUR][1000 genomes]
rs4369005	0.87[EUR][1000 genomes]
rs4375025	0.87[EUR][1000 genomes]
rs4449817	0.87[EUR][1000 genomes]
rs4552922	0.87[EUR][1000 genomes]
rs4552923	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4598272	0.87[EUR][1000 genomes]
rs4875492	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4875493	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4875494	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62493298	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62493299	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6990899	0.87[EUR][1000 genomes]
rs7823730	0.82[EUR][1000 genomes]
rs966354	0.82[EUR][1000 genomes]
rs966355	0.82[EUR][1000 genomes]
rs966356	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv889978	chr8:4853197-5460166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831217	chr8:5007449-5210093	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv609902	chr8:5088786-5533605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1031427	chr8:5129076-5603378	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv16492	chr8:5150393-5161603	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv889985	chr8:5151457-5194048	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv1018219	chr8:5151611-5173873	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv1031634	chr8:5151611-5234951	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1023633	chr8:5157363-5170509	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:5157800-5159400	Enhancers	Fetal Muscle Leg	muscle
2	chr8:5158600-5158800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr8:5158600-5159000	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links