Variant report

Variant	rs13250776
Chromosome Location	chrX:64503024-64503025
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13277337	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1458938	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1841129	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2054258	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2054259	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35297548	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4348497	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4840415	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4841148	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62496173	0.81[AMR][1000 genomes]
rs7812534	0.84[AMR][1000 genomes]
rs7817527	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7828059	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817451	chrX:64049597-64916072	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv916714	chrX:64178342-64589821	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv491830	chrX:64263556-64525424	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:64502800-64503200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
2	chrX:64502800-64503200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chrX:64502800-64503200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chrX:64502800-64503200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chrX:64502800-64503200	Enhancers	Rectal Smooth Muscle	rectum
6	chrX:64503000-64503400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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