Variant report

Variant	rs13251739
Chromosome Location	chr8:4303662-4303663
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1006583	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs11781724	1.00[ASW][hapmap]
rs11784730	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs12549303	0.88[CHB][hapmap]
rs12549644	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1561341	1.00[CHB][hapmap]
rs17070283	1.00[JPT][hapmap]
rs17070295	1.00[JPT][hapmap]
rs17336607	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs17336628	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17336844	1.00[JPT][hapmap]
rs17414897	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2115966	0.88[CHB][hapmap]
rs2115967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2163307	0.89[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs35156308	0.85[ASN][1000 genomes]
rs5000535	0.81[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs5000536	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs5000538	0.85[ASN][1000 genomes]
rs7008571	1.00[LWK][hapmap]
rs73660853	0.85[ASN][1000 genomes]
rs73660854	0.85[ASN][1000 genomes]
rs73660855	0.85[ASN][1000 genomes]
rs73660857	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2752255	chr8:4226976-4328216	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1024293	chr8:4255656-4309691	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv539385	chr8:4255656-4309691	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1030239	chr8:4282088-4305779	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	nsv1032820	chr8:4282334-4306330	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv889950	chr8:4282618-4320656	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	nsv889951	chr8:4283673-4317346	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	nsv889952	chr8:4283673-4319714	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv889953	chr8:4283673-4320342	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv1033942	chr8:4289483-4350738	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv539387	chr8:4289483-4350738	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv525809	chr8:4295445-4357525	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1017133	chr8:4296370-4325958	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
20	nsv522960	chr8:4297876-4322454	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv34276	chr8:4302914-4350652	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv523545	chr8:4303398-4335682	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3692956	chr8:4303398-4350652	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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