Variant report

Variant	rs13252210
Chromosome Location	chr8:9769543-9769544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12548011	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1962430	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2055729	0.90[CEU][hapmap]
rs4841254	0.84[CEU][hapmap]
rs491364	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs506276	0.95[CEU][hapmap];0.86[CHB][hapmap]
rs592420	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3335115	chr8:9769258-9769661	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9765600-9770200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:9766600-9771200	Enhancers	Fetal Brain Male	brain
3	chr8:9767200-9770400	Enhancers	Brain Germinal Matrix	brain
4	chr8:9768600-9775800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:9768600-9776600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:9769200-9769600	Flanking Active TSS	Fetal Brain Female	brain
7	chr8:9769200-9769800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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