Variant report

Variant	rs13252333
Chromosome Location	chr8:122316171-122316172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122314614..122316625-chr8:122317794..122319472,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10098524	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10108946	0.91[AFR][1000 genomes]
rs10110068	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10505399	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10956015	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10956016	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10956024	0.87[AFR][1000 genomes]
rs10956025	0.91[AFR][1000 genomes]
rs11774560	0.91[AFR][1000 genomes]
rs11776971	0.97[AFR][1000 genomes]
rs11780879	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11784659	0.91[AFR][1000 genomes]
rs11787462	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12542817	0.91[AFR][1000 genomes]
rs12545502	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12548012	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12550352	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12675443	0.88[AFR][1000 genomes]
rs13251111	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13257834	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13258169	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13261121	0.86[AFR][1000 genomes]
rs13262587	0.87[AFR][1000 genomes]
rs13263931	0.88[AFR][1000 genomes]
rs13268694	0.88[AFR][1000 genomes]
rs13273237	0.84[AFR][1000 genomes]
rs13276913	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7000983	0.90[AFR][1000 genomes]
rs7813656	0.91[AFR][1000 genomes]
rs7814245	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7819094	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7819325	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7819377	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7819578	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7819933	0.91[AFR][1000 genomes]
rs7820134	0.88[AFR][1000 genomes]
rs7823206	0.93[AFR][1000 genomes]
rs7834486	0.81[EUR][1000 genomes]
rs7835432	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7835619	0.81[EUR][1000 genomes]
rs7835848	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1017726	chr8:122307499-122339722	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122313600-122318000	Weak transcription	Fetal Intestine Large	intestine

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