Variant report

Variant	rs13254354
Chromosome Location	chr8:96442424-96442425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13267530	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429930	chr8:96317910-96454743	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1026549	chr8:96367183-96573134	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539681	chr8:96367183-96573134	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1031846	chr8:96380353-96501647	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv539682	chr8:96380353-96501647	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1030659	chr8:96380353-97142611	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv2761450	chr8:96392380-96461950	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv611760	chr8:96428448-96607028	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96431200-96442600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:96440400-96442600	Weak transcription	Right Atrium	heart
3	chr8:96441800-96442800	Enhancers	Gastric	stomach
4	chr8:96441800-96444400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:96441800-96444400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:96442400-96442600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:96442400-96442600	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr8:96442400-96442600	Enhancers	Brain Anterior Caudate	brain
9	chr8:96442400-96442600	Active TSS	Colon Smooth Muscle	Colon
10	chr8:96442400-96442600	Enhancers	Stomach Smooth Muscle	stomach
11	chr8:96442400-96442800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:96442400-96442800	Enhancers	Ovary	ovary
13	chr8:96442400-96443000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:96442400-96443000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:96442400-96443800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr8:96442400-96444000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr8:96442400-96444000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:96442400-96444200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:96442400-96444400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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