Variant report

Variant	rs13257208
Chromosome Location	chr8:8918343-8918344
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11780214	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11782281	0.84[EUR][1000 genomes]
rs12681075	0.81[EUR][1000 genomes]
rs17155071	0.83[EUR][1000 genomes]
rs2084076	0.82[EUR][1000 genomes]
rs2288669	0.81[EUR][1000 genomes]
rs2288670	0.81[EUR][1000 genomes]
rs2288672	0.81[EUR][1000 genomes]
rs2409119	0.84[EUR][1000 genomes]
rs2915248	0.82[EUR][1000 genomes]
rs2915252	0.83[EUR][1000 genomes]
rs2915253	0.82[EUR][1000 genomes]
rs2921370	0.81[EUR][1000 genomes]
rs2921374	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2921376	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2921379	0.81[EUR][1000 genomes]
rs2953800	0.82[EUR][1000 genomes]
rs2953801	0.82[EUR][1000 genomes]
rs2953803	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2953808	0.88[EUR][1000 genomes]
rs2953809	0.88[EUR][1000 genomes]
rs2956242	0.81[EUR][1000 genomes]
rs2956243	0.81[EUR][1000 genomes]
rs2979246	0.86[EUR][1000 genomes]
rs2979249	0.96[EUR][1000 genomes]
rs2979250	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2979260	0.80[EUR][1000 genomes]
rs2979261	0.81[EUR][1000 genomes]
rs2979263	0.80[EUR][1000 genomes]
rs2979264	0.80[EUR][1000 genomes]
rs2979266	0.82[EUR][1000 genomes]
rs35076339	0.81[EUR][1000 genomes]
rs4081881	0.85[EUR][1000 genomes]
rs6422353	0.85[EUR][1000 genomes]
rs67831654	0.81[EUR][1000 genomes]
rs73195769	0.81[EUR][1000 genomes]
rs7357601	0.85[EUR][1000 genomes]
rs7824140	0.83[EUR][1000 genomes]
rs987537	0.85[EUR][1000 genomes]
rs987538	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8899000-8919200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:8915000-8923600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:8915400-8928000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:8915800-8918600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:8916000-8918600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:8916000-8923200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:8916000-8923400	Weak transcription	Osteobl	bone
8	chr8:8916000-8935200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:8916200-8919600	Weak transcription	Fetal Intestine Small	intestine
10	chr8:8916200-8921600	Weak transcription	K562	blood
11	chr8:8916200-8923400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:8916400-8920000	Weak transcription	Fetal Intestine Large	intestine
13	chr8:8916600-8923400	Weak transcription	Fetal Heart	heart
14	chr8:8917200-8921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:8917800-8918400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:8918000-8918600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:8918000-8918800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr8:8918000-8918800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr8:8918000-8919800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr8:8918200-8918600	Enhancers	HUES48 Cell Line	embryonic stem cell

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