Variant report

Variant	rs13260214
Chromosome Location	chr8:120010833-120010834
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10090576	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10955919	0.81[AMR][1000 genomes]
rs11995824	0.85[EUR][1000 genomes]
rs12682278	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13254554	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13262276	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13264791	0.83[AMR][1000 genomes]
rs1485307	0.86[EUR][1000 genomes]
rs2062375	0.81[EUR][1000 genomes]
rs2062376	0.81[EUR][1000 genomes]
rs2062377	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2220189	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4305930	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4307369	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4313185	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4336637	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4354338	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4355805	0.84[AMR][1000 genomes]
rs4397431	0.83[AMR][1000 genomes]
rs4416847	0.81[EUR][1000 genomes]
rs4563920	0.84[AMR][1000 genomes]
rs4567065	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4618726	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4876876	0.82[AMR][1000 genomes]
rs6469792	0.81[EUR][1000 genomes]
rs6469794	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6469796	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6469798	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67819415	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6984287	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6984572	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6992497	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6996754	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6999476	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7010043	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7013203	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7014574	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7016585	0.81[AMR][1000 genomes]
rs7822098	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7824837	0.80[EUR][1000 genomes]
rs7838083	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7842942	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv522241	chr8:119995697-120027871	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120007000-120013600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:120008000-120012400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:120008400-120012000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links