Variant report

Variant	rs13261924
Chromosome Location	chr8:105019454-105019455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104653295..104654961-chr8:105016847..105019762,2	MCF-7	breast:
2	chr8:105017671..105019829-chr8:105023153..105025730,2	K562	blood:

Variant related genes	Relation type
ENSG00000228393	Chromatin interaction
ENSG00000005483	Chromatin interaction
ENSG00000239569	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10088908	0.90[ASN][1000 genomes]
rs10089678	0.90[ASN][1000 genomes]
rs10089935	0.94[ASN][1000 genomes]
rs10090200	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10090566	0.94[ASN][1000 genomes]
rs10093148	0.95[ASN][1000 genomes]
rs10094163	0.90[ASN][1000 genomes]
rs10094443	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095111	0.97[ASN][1000 genomes]
rs10095841	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10099597	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10099604	0.97[ASN][1000 genomes]
rs10102864	0.97[ASN][1000 genomes]
rs10104024	0.94[ASN][1000 genomes]
rs10104609	0.97[ASN][1000 genomes]
rs10104834	0.97[ASN][1000 genomes]
rs10105325	0.94[ASN][1000 genomes]
rs10105457	0.94[ASN][1000 genomes]
rs10106473	0.97[ASN][1000 genomes]
rs10107363	0.94[ASN][1000 genomes]
rs10108184	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108518	0.97[ASN][1000 genomes]
rs10108718	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108895	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110236	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111689	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113583	0.82[ASN][1000 genomes]
rs10505054	0.90[ASN][1000 genomes]
rs11774995	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11780056	0.97[ASN][1000 genomes]
rs11986611	0.90[ASN][1000 genomes]
rs11989077	0.90[ASN][1000 genomes]
rs11991635	0.97[ASN][1000 genomes]
rs11991639	0.97[ASN][1000 genomes]
rs11995455	0.97[ASN][1000 genomes]
rs12155943	0.90[ASN][1000 genomes]
rs12156287	0.97[ASN][1000 genomes]
rs12335031	0.90[ASN][1000 genomes]
rs12335061	0.97[ASN][1000 genomes]
rs13252467	0.97[ASN][1000 genomes]
rs13261102	0.90[ASN][1000 genomes]
rs13267260	0.97[ASN][1000 genomes]
rs13268255	0.90[ASN][1000 genomes]
rs13270186	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271959	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272829	0.97[ASN][1000 genomes]
rs13273680	0.90[ASN][1000 genomes]
rs13276571	0.90[ASN][1000 genomes]
rs13277316	0.97[ASN][1000 genomes]
rs13278028	0.90[ASN][1000 genomes]
rs13278933	0.97[ASN][1000 genomes]
rs13279844	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13280640	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13280836	0.90[ASN][1000 genomes]
rs13438964	0.90[ASN][1000 genomes]
rs13438970	0.90[ASN][1000 genomes]
rs13439722	0.90[ASN][1000 genomes]
rs16870937	0.90[ASN][1000 genomes]
rs16892387	0.90[ASN][1000 genomes]
rs16892389	0.90[ASN][1000 genomes]
rs16892392	0.90[ASN][1000 genomes]
rs2340768	0.90[ASN][1000 genomes]
rs28494837	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588728	0.97[ASN][1000 genomes]
rs28637802	0.97[ASN][1000 genomes]
rs28639558	0.90[ASN][1000 genomes]
rs28715567	0.97[ASN][1000 genomes]
rs28783218	0.90[ASN][1000 genomes]
rs34015745	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34057449	0.97[ASN][1000 genomes]
rs34057677	0.97[ASN][1000 genomes]
rs34387863	0.97[ASN][1000 genomes]
rs34555846	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34673151	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34893520	0.90[ASN][1000 genomes]
rs35309447	0.90[ASN][1000 genomes]
rs35388563	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35426233	0.97[ASN][1000 genomes]
rs35753936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35865058	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35870907	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4305866	0.97[ASN][1000 genomes]
rs4389894	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4446703	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4512346	0.90[ASN][1000 genomes]
rs4573242	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4581014	0.97[ASN][1000 genomes]
rs4620251	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55788818	0.97[ASN][1000 genomes]
rs57309489	0.90[ASN][1000 genomes]
rs59495191	0.97[ASN][1000 genomes]
rs60380097	0.97[ASN][1000 genomes]
rs62508071	0.90[ASN][1000 genomes]
rs62510989	0.97[ASN][1000 genomes]
rs62527148	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62527155	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520866	0.84[ASN][1000 genomes]
rs7461164	0.86[ASN][1000 genomes]
rs7846436	0.94[ASN][1000 genomes]
rs9297344	0.90[ASN][1000 genomes]
rs9642999	0.95[ASN][1000 genomes]
rs9650012	0.90[ASN][1000 genomes]
rs9942756	0.90[ASN][1000 genomes]
rs9969594	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv891248	chr8:104956705-105043211	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465753	chr8:104956705-105136549	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv611833	chr8:104956705-105136549	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv1824479	chr8:104961899-105032765	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv891249	chr8:104963377-105077013	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	esv19075	chr8:105015114-105025274	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv611834	chr8:105016866-105140610	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105002400-105025600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:105019200-105040400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:105019400-105022600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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