Variant report

Variant	rs13262119
Chromosome Location	chr8:99082854-99082855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11775531	0.80[EUR][1000 genomes]
rs11998201	0.92[EUR][1000 genomes]
rs13253861	0.85[EUR][1000 genomes]
rs13262105	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55698139	0.80[EUR][1000 genomes]
rs7006113	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7835905	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv465745	chr8:99061992-99116201	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv611805	chr8:99061992-99116201	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99077600-99083200	Enhancers	Liver	Liver
2	chr8:99080200-99083400	Enhancers	HepG2	liver
3	chr8:99080800-99084400	Enhancers	Fetal Intestine Small	intestine
4	chr8:99082000-99083000	Enhancers	GM12878-XiMat	blood
5	chr8:99082000-99083400	Enhancers	Placenta	Placenta
6	chr8:99082200-99084400	Enhancers	Fetal Intestine Large	intestine
7	chr8:99082400-99083600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:99082400-99090200	Weak transcription	Stomach Mucosa	stomach
9	chr8:99082400-99090800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr8:99082600-99083000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:99082800-99083200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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