Variant report

Variant	rs13262318
Chromosome Location	chr8:61798817-61798818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61798544..61800476-chr8:61802486..61805263,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16926398	1.00[CEU][hapmap]
rs41304212	0.94[EUR][1000 genomes]
rs6986750	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6988200	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61789800-61804600	Weak transcription	Pancreas	Pancrea
2	chr8:61796800-61801400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:61797400-61799000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:61797400-61799200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:61797400-61799800	Enhancers	Primary T cells from cord blood	blood
6	chr8:61797600-61799000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:61797600-61799000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr8:61797600-61799000	Enhancers	Primary B cells from peripheral blood	blood
9	chr8:61797600-61799000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:61797600-61799000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr8:61797600-61799000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr8:61797600-61799200	Enhancers	Primary B cells from cord blood	blood
13	chr8:61797600-61799200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr8:61797600-61799200	Enhancers	Primary hematopoietic stem cells	blood
15	chr8:61797600-61799200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr8:61797600-61799200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr8:61797600-61799200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr8:61797600-61799200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr8:61797600-61799200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:61797600-61799200	Enhancers	Fetal Thymus	thymus
21	chr8:61797600-61799400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr8:61798000-61799000	Enhancers	Thymus	Thymus
23	chr8:61798000-61799000	Enhancers	GM12878-XiMat	blood
24	chr8:61798400-61799000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr8:61798600-61799000	Enhancers	Monocytes-CD14+_RO01746	blood

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