Variant report

Variant	rs13262758
Chromosome Location	chr8:95647792-95647793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10956922	1.00[JPT][hapmap]
rs10956923	1.00[JPT][hapmap]
rs6471454	1.00[JPT][hapmap]
rs7002041	1.00[JPT][hapmap]
rs7009742	1.00[JPT][hapmap]
rs7386115	1.00[JPT][hapmap]
rs7387427	1.00[JPT][hapmap]
rs7840357	1.00[JPT][hapmap]
rs7842319	0.83[CHD][hapmap];1.00[GIH][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv429929	chr8:95564533-95676894	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv2606027	chr8:95646213-95649518	Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv3480553	chr8:95646735-95648837	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
8	esv3480554	chr8:95646735-95648837	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
9	esv3480555	chr8:95646772-95649115	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
10	esv2033943	chr8:95646819-95649128	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
11	esv3480556	chr8:95646880-95648972	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
12	esv19892	chr8:95647007-95647921	Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13262758	UQCRB	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95636000-95650800	Weak transcription	Pancreas	Pancrea
2	chr8:95646000-95650200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr8:95646200-95650200	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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