Variant report

Variant	rs1326303
Chromosome Location	chr20:24443533-24443534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24420874..24424389-chr20:24442088..24445319,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1326302	0.87[EUR][1000 genomes]
rs16986641	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815272	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57281014	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114734	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6114735	0.86[EUR][1000 genomes]
rs61548213	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs722602	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24439600-24449200	Weak transcription	Gastric	stomach
2	chr20:24439800-24449800	Weak transcription	Right Atrium	heart
3	chr20:24441800-24444200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr20:24441800-24444200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr20:24441800-24444600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr20:24441800-24445000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:24441800-24446600	Enhancers	Brain Substantia Nigra	brain
8	chr20:24442000-24443600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr20:24442000-24444400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr20:24442000-24444400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr20:24442000-24446000	Enhancers	Brain Germinal Matrix	brain
12	chr20:24442000-24446400	Enhancers	Brain Hippocampus Middle	brain
13	chr20:24442000-24446800	Enhancers	Fetal Muscle Leg	muscle
14	chr20:24442000-24447200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr20:24442000-24447400	Enhancers	Brain Anterior Caudate	brain
16	chr20:24442000-24447400	Enhancers	Brain Cingulate Gyrus	brain
17	chr20:24442200-24444200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr20:24442200-24445400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr20:24442400-24444000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr20:24442400-24444400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr20:24442400-24447200	Enhancers	Brain Angular Gyrus	brain
22	chr20:24442600-24443600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr20:24442600-24443800	Enhancers	Fetal Stomach	stomach
24	chr20:24442600-24444200	Enhancers	Fetal Lung	lung
25	chr20:24442600-24444200	Weak transcription	Right Ventricle	heart
26	chr20:24442600-24444600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr20:24442600-24445000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr20:24442800-24443600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr20:24443200-24443600	Enhancers	Fetal Brain Female	brain
30	chr20:24443200-24444400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr20:24443400-24444600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr20:24443400-24444800	Weak transcription	Fetal Brain Male	brain
33	chr20:24443400-24445000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr20:24443400-24448200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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