Variant report

Variant	rs13263296
Chromosome Location	chr8:120886545-120886546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120866730..120869816-chr8:120885660..120889126,4	MCF-7	breast:
2	chr8:120866641..120870729-chr8:120883446..120889946,10	MCF-7	breast:
3	chr8:120843931..120845591-chr8:120884671..120887601,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DSCC1-1	chr8:120886527-120886723	ENSG00000253531
2	lnc-DSCC1-1	chr8:120885061-120886728	ENSG00000245330.4

Variant related genes	Relation type
ENSG00000064313	Chromatin interaction
ENSG00000136982	Chromatin interaction

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10093230	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10094455	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10094458	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10094587	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10098306	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10103058	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10103660	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10107251	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10107361	0.86[AMR][1000 genomes]
rs10107579	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10110216	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10110223	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10216503	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10217083	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10808505	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10955940	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10955941	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11777705	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11781657	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12545854	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12545863	0.83[AFR][1000 genomes]
rs12677814	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12679937	0.83[AFR][1000 genomes]
rs12681402	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12681623	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12681883	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13249122	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13250594	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13253140	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13257252	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13257316	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13258592	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13259990	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13260088	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13260933	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13261304	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13265367	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13265546	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13267652	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13267896	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13269024	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13275524	0.83[AFR][1000 genomes]
rs13275528	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13277947	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13277992	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13279398	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13281299	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13282901	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1464276	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1467044	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1607624	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2037346	0.82[AMR][1000 genomes]
rs28513081	0.82[AMR][1000 genomes]
rs28669275	0.88[AMR][1000 genomes]
rs35272074	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4073560	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4871012	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4871013	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4871772	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4871773	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4871787	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs55892034	0.82[AMR][1000 genomes]
rs56864850	0.82[AMR][1000 genomes]
rs6469861	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6469862	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6469863	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6469864	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6469865	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6469867	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6469868	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6469870	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6469871	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6469872	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6469878	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6987580	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6988011	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6989741	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6993375	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6993797	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6995139	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7002839	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7003126	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7006905	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7015470	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7387264	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7387694	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7388508	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7459671	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7461290	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7462250	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7462302	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7465181	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7465609	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7465612	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7814294	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7814496	0.87[AMR][1000 genomes]
rs7814520	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7818471	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7824545	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7829901	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7832923	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7843326	0.81[AFR][1000 genomes]
rs939241	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs939242	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9649947	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9720591	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9721029	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9721042	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9987332	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1021071	chr8:120589963-120968317	Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv465789	chr8:120636850-120994394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv612111	chr8:120636850-120994394	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv427826	chr8:120642181-120953395	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120885400-120886600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr8:120885400-120886800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr8:120885400-120887000	Active TSS	Fetal Brain Female	brain
4	chr8:120885400-120887400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr8:120885400-120887800	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr8:120885600-120886800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr8:120885600-120886800	Active TSS	Thymus	Thymus
8	chr8:120885600-120886800	Flanking Active TSS	Dnd41	blood
9	chr8:120885600-120887000	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr8:120885600-120887000	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr8:120885600-120887000	Active TSS	Fetal Brain Male	brain
12	chr8:120885600-120887000	Active TSS	Left Ventricle	heart
13	chr8:120885600-120887200	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr8:120885600-120887200	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr8:120885600-120887200	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr8:120885600-120887200	Active TSS	Right Ventricle	heart
17	chr8:120885600-120887200	Active TSS	Sigmoid Colon	Sigmoid Colon
18	chr8:120885600-120887400	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr8:120885600-120887400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:120885600-120888200	Active TSS	Brain Hippocampus Middle	brain
21	chr8:120885600-120888200	Active TSS	Psoas Muscle	Psoas
22	chr8:120885600-120888200	Active TSS	Right Atrium	heart
23	chr8:120885600-120889000	Active TSS	Ovary	ovary
24	chr8:120885600-120890000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:120885800-120886600	Active TSS	Primary T cells from cord blood	blood
26	chr8:120885800-120886600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr8:120885800-120886600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:120885800-120886600	Active TSS	Muscle Satellite Cultured Cells	--
29	chr8:120885800-120886600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr8:120885800-120886600	Active TSS	Rectal Mucosa Donor 31	rectum
31	chr8:120885800-120886600	Active TSS	NH-A	brain
32	chr8:120885800-120886800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr8:120885800-120886800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:120885800-120886800	Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr8:120885800-120886800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr8:120885800-120886800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr8:120885800-120886800	Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr8:120885800-120886800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:120885800-120886800	Active TSS	Fetal Thymus	thymus
40	chr8:120885800-120886800	Active TSS	Hela-S3	cervix
41	chr8:120885800-120886800	Active TSS	NHEK	skin
42	chr8:120885800-120887000	Active TSS	H9 Cell Line	embryonic stem cell
43	chr8:120885800-120887000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:120885800-120887000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr8:120885800-120887000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:120885800-120887000	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr8:120885800-120887000	Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr8:120885800-120887000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr8:120885800-120887000	Active TSS	Brain Germinal Matrix	brain
50	chr8:120885800-120887000	Active TSS	Fetal Adrenal Gland	Adrenal Gland

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