Variant report
| Variant | rs13263602 |
|---|---|
| Chromosome Location | chr8:92350684-92350685 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:222152339..222153185-chr8:92350257..92350974,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10088955 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10092223 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10101012 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13248502 | 1.00[CHB][hapmap] |
| rs13254176 | 1.00[CHB][hapmap] |
| rs13259915 | 1.00[CHB][hapmap] |
| rs13265284 | 1.00[CHB][hapmap] |
| rs13265723 | 1.00[CHB][hapmap] |
| rs13268588 | 1.00[CHB][hapmap] |
| rs13270617 | 1.00[JPT][hapmap] |
| rs13277179 | 1.00[CHB][hapmap] |
| rs17722765 | 1.00[CHB][hapmap] |
| rs4734519 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4734520 | 1.00[JPT][hapmap] |
| rs6471276 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6471277 | 0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6993516 | 1.00[CHB][hapmap] |
| rs6995526 | 1.00[CHB][hapmap] |
| rs7823182 | 1.00[CHB][hapmap] |
| rs7837310 | 1.00[CHB][hapmap] |
| rs921231 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028628 | chr8:91680968-92418954 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539672 | chr8:91680968-92418954 | Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs13263602 | PLEKHF2 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
