Variant report

Variant	rs13264275
Chromosome Location	chr8:95246416-95246417
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95246301..95247205-chr9:108320150..108320809,2	HCT-116	colon:
2	chr8:95244367..95248911-chr8:95252094..95255731,6	MCF-7	breast:
3	chr8:95228655..95231086-chr8:95245435..95247101,2	MCF-7	breast:
4	chr8:95240844..95244152-chr8:95245097..95248087,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228317	Chromatin interaction
ENSG00000106692	Chromatin interaction
ENSG00000079112	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10098593	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs10098632	1.00[CHB][hapmap];1.00[GIH][hapmap]
rs10100998	1.00[CHB][hapmap]
rs10107715	1.00[CHB][hapmap]
rs13262340	1.00[ASN][1000 genomes]
rs13262872	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1600766	1.00[CHB][hapmap]
rs34111181	1.00[ASN][1000 genomes]
rs4735277	0.83[EUR][1000 genomes]
rs56075619	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66551772	1.00[ASN][1000 genomes]
rs67246746	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016142	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024907	chr8:95188944-95296378	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv539677	chr8:95188944-95296378	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1024893	chr8:95189085-95293557	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022489	chr8:95212660-95273564	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv539679	chr8:95212660-95273564	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035036	chr8:95213244-95283014	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95237000-95247000	Weak transcription	A549	lung
2	chr8:95240400-95246800	Weak transcription	Spleen	Spleen
3	chr8:95244200-95247400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:95245400-95246600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:95245400-95247200	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr8:95245600-95247400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:95245600-95247400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:95246000-95253200	Weak transcription	Fetal Brain Male	brain
9	chr8:95246200-95246600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:95246200-95246600	Enhancers	Duodenum Mucosa	Duodenum
11	chr8:95246200-95246600	Active TSS	Right Atrium	heart
12	chr8:95246200-95246800	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr8:95246200-95246800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:95246200-95246800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:95246200-95246800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:95246200-95246800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
17	chr8:95246200-95247000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:95246200-95247000	Active TSS	Fetal Brain Female	brain
19	chr8:95246200-95247200	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr8:95246200-95247200	Active TSS	H9 Cell Line	embryonic stem cell
21	chr8:95246200-95247200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:95246400-95246600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
23	chr8:95246400-95246600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:95246400-95246600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:95246400-95246600	Enhancers	Primary B cells from peripheral blood	blood
26	chr8:95246400-95246600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr8:95246400-95246600	Active TSS	Primary hematopoietic stem cells	blood
28	chr8:95246400-95246600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
29	chr8:95246400-95246600	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr8:95246400-95246600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:95246400-95246600	Active TSS	Muscle Satellite Cultured Cells	--
32	chr8:95246400-95246600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:95246400-95246600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
34	chr8:95246400-95246600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr8:95246400-95246600	Enhancers	Stomach Mucosa	stomach
36	chr8:95246400-95246600	Bivalent/Poised TSS	GM12878-XiMat	blood
37	chr8:95246400-95246600	Active TSS	NHDF-Ad	bronchial
38	chr8:95246400-95246800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:95246400-95246800	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr8:95246400-95246800	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr8:95246400-95246800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:95246400-95246800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr8:95246400-95246800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:95246400-95246800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr8:95246400-95246800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
46	chr8:95246400-95246800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr8:95246400-95246800	Active TSS	Aorta	Aorta
48	chr8:95246400-95246800	Active TSS	Brain Angular Gyrus	brain
49	chr8:95246400-95246800	Active TSS	Brain Anterior Caudate	brain
50	chr8:95246400-95246800	Active TSS	Brain Cingulate Gyrus	brain

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