Variant report

Variant	rs13265324
Chromosome Location	chr8:126588177-126588178
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126496567..126498412-chr8:126588159..126590047,2	MCF-7	breast:
2	chr8:126586635..126589036-chr8:126593188..126594968,2	MCF-7	breast:
3	chr8:126557363..126560021-chr8:126585266..126588232,2	MCF-7	breast:
4	chr8:126585008..126593535-chr8:126599853..126611131,18	MCF-7	breast:
5	chr8:126576798..126579198-chr8:126587964..126590144,2	K562	blood:
6	chr8:126441996..126443997-chr8:126586570..126588653,2	MCF-7	breast:
7	chr8:126579931..126585815-chr8:126586527..126590543,9	MCF-7	breast:
8	chr8:126559888..126562095-chr8:126587973..126591145,3	MCF-7	breast:
9	chr8:126442474..126445557-chr8:126586829..126589488,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10110589	0.95[CEU][hapmap]
rs1015109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11777118	0.85[CEU][hapmap]
rs11988437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11991475	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11996453	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11998450	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs13255329	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13269369	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs13277305	0.84[EUR][1000 genomes]
rs1454617	0.85[CEU][hapmap]
rs1454618	0.85[CEU][hapmap]
rs2124038	0.91[CEU][hapmap]
rs7016867	0.92[EUR][1000 genomes]
rs7821956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126569800-126588200	Weak transcription	Spleen	Spleen
2	chr8:126581600-126590800	Weak transcription	Lung	lung
3	chr8:126582000-126588200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:126582800-126590800	Weak transcription	Esophagus	oesophagus
5	chr8:126582800-126591200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:126583000-126588200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:126583000-126588200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:126583000-126589200	Weak transcription	Colonic Mucosa	Colon
9	chr8:126583000-126591200	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:126583000-126591200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:126584200-126588200	Weak transcription	Small Intestine	intestine
12	chr8:126584600-126588200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr8:126584800-126588600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:126586200-126589200	Enhancers	Placenta	Placenta
15	chr8:126586200-126590000	Enhancers	Fetal Intestine Small	intestine
16	chr8:126586600-126588800	Enhancers	Liver	Liver
17	chr8:126586600-126589000	Enhancers	Primary B cells from cord blood	blood
18	chr8:126586600-126589600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:126586800-126588800	Enhancers	HMEC	breast
20	chr8:126586800-126589000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:126586800-126589400	Enhancers	Fetal Kidney	kidney
22	chr8:126586800-126589400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr8:126586800-126589600	Enhancers	Fetal Intestine Large	intestine
24	chr8:126586800-126590600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:126587000-126591000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr8:126587000-126594600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr8:126587200-126588200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:126587400-126590800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr8:126587600-126588400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:126587600-126588400	Enhancers	Placenta Amnion	Placenta Amnion
31	chr8:126587600-126588400	Enhancers	NHEK	skin
32	chr8:126587600-126588600	Enhancers	Hela-S3	cervix
33	chr8:126587600-126589400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:126587600-126590000	Enhancers	Fetal Lung	lung
35	chr8:126587800-126588200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:126587800-126588200	Enhancers	Osteobl	bone
37	chr8:126587800-126588800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr8:126587800-126589000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr8:126587800-126589400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:126587800-126594800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr8:126588000-126589000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:126588000-126589000	Enhancers	Adipose Nuclei	Adipose
43	chr8:126588000-126589000	Flanking Active TSS	HepG2	liver

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