Variant report
| Variant | rs13266837 |
|---|---|
| Chromosome Location | chr8:59614516-59614517 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:10)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:10 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:59425486..59426187-chr8:59614319..59614923,2 | K562 | blood: | |
| 2 | chr8:59554274..59556738-chr8:59613834..59616221,2 | K562 | blood: | |
| 3 | chr8:59371866..59372422-chr8:59614010..59614968,2 | MCF-7 | breast: | |
| 4 | chr8:59471998..59473866-chr8:59612178..59614856,2 | K562 | blood: | |
| 5 | chr8:59570231..59572526-chr8:59612952..59614876,2 | MCF-7 | breast: | |
| 6 | chr8:59371854..59372897-chr8:59614036..59614890,5 | K562 | blood: | |
| 7 | chr8:59465091..59467198-chr8:59613336..59616272,2 | K562 | blood: | |
| 8 | chr8:59492385..59492924-chr8:59613980..59614521,2 | K562 | blood: | |
| 9 | chr8:59571856..59573746-chr8:59614192..59616705,2 | K562 | blood: | |
| 10 | chr8:59520861..59521820-chr8:59613981..59614896,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000035681 | Chromatin interaction |
| ENSG00000137575 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10093613 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10109961 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10957064 | 0.93[CEU][hapmap] |
| rs12682103 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16923680 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1979610 | 0.82[CEU][hapmap] |
| rs4738702 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6471738 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs750961 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7813099 | 0.82[CEU][hapmap] |
| rs8180998 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv890938 | chr8:59355053-59809785 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv831325 | chr8:59492580-59694443 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | esv3436252 | chr8:59581925-59615994 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1025575 | chr8:59609825-59632135 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs13266837 | XKR4 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
