Variant report

Variant	rs13269273
Chromosome Location	chr8:103430407-103430408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr8:103430115-103430418	T-47D	breast:	n/a	n/a
2	FOXA1	chr8:103430059-103430455	HepG2	liver:	n/a	n/a
3	FOXA1	chr8:103429978-103430457	HepG2	liver:	n/a	n/a
4	FOXA1	chr8:103430042-103430481	HepG2	liver:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KB-1980E6.3.1-4	chr8:103430207-103431181	NONHSAT128090

Variant related genes	Relation type
RNU6ATAC8P	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10505020	0.80[CEU][hapmap]
rs10505028	0.90[CHB][hapmap]
rs13248227	0.83[JPT][hapmap]
rs13248603	0.80[CEU][hapmap]
rs13249865	0.80[CEU][hapmap]
rs13263132	0.80[CEU][hapmap]
rs13266369	0.85[ASN][1000 genomes]
rs13269311	0.80[CEU][hapmap]
rs13270182	0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs13278798	0.80[CEU][hapmap]
rs13281324	0.91[JPT][hapmap]
rs16869377	0.90[CHB][hapmap];1.00[GIH][hapmap]
rs16869423	0.90[CHB][hapmap];1.00[GIH][hapmap]
rs2061299	0.80[CEU][hapmap]
rs2293983	0.90[CHB][hapmap];1.00[GIH][hapmap]
rs2607663	0.82[JPT][hapmap]
rs2853232	0.82[JPT][hapmap]
rs2853236	0.82[JPT][hapmap]
rs34300781	0.84[ASN][1000 genomes]
rs34620785	0.83[ASN][1000 genomes]
rs3736653	0.90[CHB][hapmap];1.00[GIH][hapmap]
rs4269511	0.81[CHB][hapmap];0.88[GIH][hapmap]
rs4483125	0.80[CEU][hapmap]
rs4495397	0.83[JPT][hapmap]
rs4609174	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4734619	0.83[JPT][hapmap]
rs4734621	0.81[ASN][1000 genomes]
rs58177193	0.93[ASN][1000 genomes]
rs62523109	0.93[ASN][1000 genomes]
rs62523140	0.90[ASN][1000 genomes]
rs62523142	0.87[ASN][1000 genomes]
rs72606690	0.82[ASN][1000 genomes]
rs7823262	0.80[ASN][1000 genomes]
rs7844250	0.80[ASN][1000 genomes]
rs9642790	0.80[ASN][1000 genomes]
rs9650000	0.80[CEU][hapmap]
rs9650001	0.80[CEU][hapmap]
rs9650002	0.80[CEU][hapmap]
rs9693239	0.91[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103425600-103432600	Weak transcription	Left Ventricle	heart
2	chr8:103425800-103434800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:103425800-103437800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:103425800-103439600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:103425800-103439600	Weak transcription	Fetal Stomach	stomach
6	chr8:103426000-103432200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:103426200-103439600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:103426400-103434800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:103429000-103432800	Weak transcription	Primary B cells from cord blood	blood
10	chr8:103430000-103430600	Strong transcription	GM12878-XiMat	blood
11	chr8:103430400-103437200	Weak transcription	HepG2	liver

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