Variant report

Variant	rs13270766
Chromosome Location	chr8:119968733-119968734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:119968730-119968863	MCF10A-Er-Src	breast:	n/a	n/a
2	GATA3	chr8:119968620-119968925	T-47D	breast:	n/a	n/a
3	NR2F2	chr8:119968587-119969109	MCF-7	breast:	n/a	n/a
4	CEBPB	chr8:119968361-119968941	MCF-7	breast:	n/a	n/a
5	STAT3	chr8:119968678-119968930	MCF10A-Er-Src	breast:	n/a	n/a
6	GATA3	chr8:119968511-119969754	MCF-7	breast:	n/a	n/a
7	SIN3AK20	chr8:119968448-119969173	MCF-7	breast:	n/a	n/a
8	GATA3	chr8:119968588-119968956	T-47D	breast:	n/a	n/a
9	GATA3	chr8:119968561-119969056	MCF-7	breast:	n/a	n/a
10	TCF7L2	chr8:119968666-119969055	MCF-7	breast:	n/a	n/a
11	TEAD4	chr8:119968577-119969095	MCF-7	breast:	n/a	n/a
12	GATA3	chr8:119968526-119969200	SK-N-SH	brain:	n/a	n/a
13	JUND	chr8:119968590-119969126	MCF-7	breast:	n/a	n/a
14	ZNF217	chr8:119968611-119969537	MCF-7	breast:	n/a	n/a
15	CEBPB	chr8:119968607-119968775	IMR90	lung:	n/a	n/a
16	GATA3	chr8:119968317-119969827	MCF-7	breast:	n/a	n/a
17	GATA3	chr8:119968600-119969022	MCF-7	breast:	n/a	n/a
18	GATA3	chr8:119968568-119969144	SK-N-SH	brain:	n/a	n/a
19	CEBPB	chr8:119968361-119968929	Hela-S3	cervix:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:119968538..119970397-chr8:119971992..119974738,2	MCF-7	breast:
2	chr8:119967105..119969205-chr8:119969460..119971564,2	MCF-7	breast:
3	chr8:119961719..119966246-chr8:119966931..119971786,6	MCF-7	breast:

No data

Variant related genes	Relation type
TNFRSF11B	TF binding region
ENSG00000164761	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11573823	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11573846	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11573847	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11573878	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11573884	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11573888	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11573898	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11573938	1.00[YRI][hapmap]
rs13270860	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13276474	1.00[CHB][hapmap]
rs13282510	1.00[CHB][hapmap]
rs1385502	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1385504	0.87[GIH][hapmap]
rs1385505	0.87[GIH][hapmap]
rs1385506	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1385509	1.00[ASN][1000 genomes]
rs1485289	0.85[YRI][hapmap]
rs1564858	1.00[CHB][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap]
rs17179200	1.00[CHB][hapmap]
rs2073618	0.85[YRI][hapmap]
rs3102735	0.87[GIH][hapmap]
rs35878777	1.00[ASN][1000 genomes]
rs35968003	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4460404	1.00[CHB][hapmap]
rs4537331	1.00[CHB][hapmap]
rs6469783	1.00[CHB][hapmap]
rs6995365	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71532413	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7464496	0.85[YRI][hapmap]
rs7828837	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837001	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837123	0.96[GIH][hapmap]
rs7845642	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119964800-119971800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:119965000-119973800	Weak transcription	Pancreas	Pancrea
3	chr8:119965200-119970600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:119965200-119973000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:119965200-119973800	Weak transcription	NHLF	lung
6	chr8:119965400-119969600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:119967600-119975400	Enhancers	Hela-S3	cervix
8	chr8:119968000-119968800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:119968600-119968800	Enhancers	NHDF-Ad	bronchial

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