Variant report

Variant	rs13273851
Chromosome Location	chr8:121852367-121852368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10094256	0.92[EUR][1000 genomes]
rs10113144	0.92[EUR][1000 genomes]
rs10808514	0.92[EUR][1000 genomes]
rs10808515	0.92[EUR][1000 genomes]
rs11784546	0.84[AFR][1000 genomes]
rs13273184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13282943	0.95[CHD][hapmap];0.83[JPT][hapmap]
rs28521810	0.92[EUR][1000 genomes]
rs34625860	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7007426	0.96[CEU][hapmap];0.83[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs7008485	0.92[EUR][1000 genomes]
rs7016893	0.92[EUR][1000 genomes]
rs7017040	0.92[EUR][1000 genomes]
rs72682582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9643149	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs9969585	0.92[EUR][1000 genomes]
rs9969664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891423	chr8:121847643-121994660	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13273851	SLC30A8	cis	cerebellum	SCAN
rs13273851	LOC100131726	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121838400-121869800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:121848400-121852400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:121850000-121853400	Enhancers	Liver	Liver
4	chr8:121850400-121855200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:121851800-121856800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:121851800-121857200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:121852000-121858200	Enhancers	HepG2	liver
8	chr8:121852200-121852800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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