Variant report

Variant	rs13274476
Chromosome Location	chr8:52694740-52694741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13250133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13253956	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13262316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13263610	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13263767	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13264394	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13267912	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13270817	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13272813	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13277070	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13279973	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17196182	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17196300	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17196343	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17210431	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17210466	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17282351	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34011046	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34070508	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34152859	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34424720	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34461077	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34724314	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34837796	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34934450	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34949360	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35025549	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35038146	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35098517	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35254751	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35314611	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35448466	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35822658	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35918180	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35933421	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36100144	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71513545	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71513547	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71513550	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71513551	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71513553	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71513558	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71513559	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71513560	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71513562	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71513563	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv831316	chr8:52660353-52842928	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1023825	chr8:52668824-52716137	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13274476	PCMTD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52686200-52703000	Weak transcription	Right Ventricle	heart
2	chr8:52692200-52696000	Weak transcription	Pancreas	Pancrea
3	chr8:52694400-52694800	ZNF genes & repeats	Aorta	Aorta
4	chr8:52694400-52695000	Genic enhancers	Left Ventricle	heart
5	chr8:52694400-52695000	Enhancers	Right Atrium	heart
6	chr8:52694600-52694800	Enhancers	Fetal Brain Male	brain

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