Variant report

Variant	rs13274635
Chromosome Location	chr8:90758337-90758338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90757406..90760998-chr8:90767519..90771455,4	MCF-7	breast:
2	chr8:90757887..90760826-chr8:90762391..90763974,2	K562	blood:

Variant related genes	Relation type
ENSG00000104312	Chromatin interaction
ENSG00000251136	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11776336	0.82[AMR][1000 genomes]
rs12156013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs218935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs218938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs370282	0.83[CEU][hapmap]
rs383592	0.92[CEU][hapmap]
rs39501	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs39502	0.89[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs39508	0.93[CEU][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs39509	0.89[CEU][hapmap]
rs39511	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs39512	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs397540	1.00[CEU][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs39762	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs39763	1.00[CEU][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs39766	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs398701	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs40247	0.86[CEU][hapmap]
rs40248	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs40378	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs40379	1.00[CEU][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs40380	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs40453	0.88[CEU][hapmap]
rs40454	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs40547	0.83[CEU][hapmap]
rs40635	1.00[CEU][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs40638	0.85[CEU][hapmap]
rs406680	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs411279	0.89[CEU][hapmap]
rs411310	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs416324	0.92[CEU][hapmap]
rs42343	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs42346	0.85[CEU][hapmap]
rs42479	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs42480	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs425721	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs426779	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs428484	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs43133	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs434264	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs450332	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs51331	0.89[CEU][hapmap]
rs7815039	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891180	chr8:90697810-90802491	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
3	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv891181	chr8:90737258-90819998	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90741600-90768200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:90742600-90767600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:90742800-90762200	Weak transcription	Aorta	Aorta
4	chr8:90746200-90767800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:90749600-90762200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:90749600-90768200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:90749800-90767800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:90749800-90768000	Weak transcription	Left Ventricle	heart
9	chr8:90749800-90768000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:90750000-90769000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr8:90750400-90761000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:90754800-90759000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:90755000-90762400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:90755000-90767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:90755200-90766600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:90755400-90766400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:90755600-90766600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr8:90756400-90762400	Weak transcription	Fetal Stomach	stomach
19	chr8:90756400-90764000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:90756400-90769200	Weak transcription	Pancreas	Pancrea
21	chr8:90757000-90758400	Weak transcription	Stomach Mucosa	stomach
22	chr8:90758200-90758400	ZNF genes & repeats	Ovary	ovary
23	chr8:90758200-90760400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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