Variant report

Variant	rs13274714
Chromosome Location	chr8:2262152-2262153
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34516069	1.00[AMR][1000 genomes]
rs34908595	1.00[AMR][1000 genomes]
rs34914543	1.00[AMR][1000 genomes]
rs35169728	1.00[AMR][1000 genomes]
rs35695552	1.00[AMR][1000 genomes]
rs36079341	1.00[AMR][1000 genomes]
rs71501033	0.86[EUR][1000 genomes]
rs71519877	1.00[AMR][1000 genomes]
rs71519878	1.00[AMR][1000 genomes]
rs71519879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2254200-2262800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:2258200-2263000	Weak transcription	Spleen	Spleen
3	chr8:2259000-2262800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:2261000-2262600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:2261000-2262800	Weak transcription	Pancreas	Pancrea
6	chr8:2261000-2263000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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