Variant report

Variant	rs13274948
Chromosome Location	chr8:103553857-103553858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103552930..103556301-chr8:103557588..103560805,4	K562	blood:
2	chr8:103553403..103555856-chr8:103556123..103559694,3	MCF-7	breast:
3	chr8:103552849..103555582-chr8:103602690..103604723,2	K562	blood:
4	chr8:103423499..103426368-chr8:103552580..103554247,2	K562	blood:
5	chr8:103549075..103551753-chr8:103552917..103555861,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104517	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10094161	0.89[ASN][1000 genomes]
rs10096888	0.96[ASN][1000 genomes]
rs10104409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13249545	0.85[ASN][1000 genomes]
rs13273726	0.96[ASN][1000 genomes]
rs1469770	0.83[ASN][1000 genomes]
rs16869515	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs28534782	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28580375	0.96[ASN][1000 genomes]
rs28756925	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35708461	0.96[ASN][1000 genomes]
rs66648401	0.89[ASN][1000 genomes]
rs7002798	0.83[ASN][1000 genomes]
rs7002944	0.88[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs9297327	0.89[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1031769	chr8:103460754-103620283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv539703	chr8:103460754-103620283	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2762761	chr8:103492356-103625244	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv1831575	chr8:103498317-103585093	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1838972	chr8:103498317-103585093	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1024876	chr8:103512785-103576658	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3419415	chr8:103525141-103575507	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103547000-103556800	Weak transcription	Spleen	Spleen
2	chr8:103550400-103554800	Weak transcription	HSMM	muscle
3	chr8:103550600-103554000	Weak transcription	Fetal Thymus	thymus
4	chr8:103550800-103589000	Weak transcription	Right Atrium	heart
5	chr8:103551000-103556000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:103551200-103556400	Weak transcription	Brain Germinal Matrix	brain
7	chr8:103551600-103554000	Weak transcription	Fetal Brain Male	brain
8	chr8:103551600-103556600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:103552000-103556400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:103553000-103554600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr8:103553200-103554000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:103553200-103554200	Enhancers	A549	lung
13	chr8:103553200-103554400	Enhancers	Fetal Intestine Small	intestine
14	chr8:103553200-103554400	Enhancers	Gastric	stomach
15	chr8:103553200-103554400	Enhancers	GM12878-XiMat	blood
16	chr8:103553200-103554800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:103553200-103555000	Enhancers	Hela-S3	cervix
18	chr8:103553400-103554000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:103553400-103554000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr8:103553400-103554000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr8:103553400-103554000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:103553400-103554200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:103553400-103554400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:103553400-103554400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr8:103553400-103554600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:103553400-103554600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:103553400-103554600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr8:103553600-103554200	Enhancers	Fetal Heart	heart
29	chr8:103553600-103554400	Enhancers	H9 Cell Line	embryonic stem cell
30	chr8:103553600-103554400	Flanking Active TSS	K562	blood
31	chr8:103553600-103554400	Enhancers	Osteobl	bone
32	chr8:103553600-103558800	Weak transcription	Psoas Muscle	Psoas
33	chr8:103553800-103554200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr8:103553800-103554200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:103553800-103554200	Enhancers	NH-A	brain
36	chr8:103553800-103554400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr8:103553800-103554600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr8:103553800-103555800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr8:103553800-103558600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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