Variant report

Variant	rs13275826
Chromosome Location	chr8:68263635-68263636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68256543..68259078-chr8:68260057..68264184,4	MCF-7	breast:
2	chr8:68262616..68264443-chr8:68289319..68290855,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10957384	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11774715	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11779287	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12674848	0.80[EUR][1000 genomes]
rs12678865	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12681292	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12682412	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13253205	0.83[AMR][1000 genomes]
rs13255070	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13267015	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13275593	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13280556	0.91[AMR][1000 genomes]
rs1544986	0.83[EUR][1000 genomes]
rs34132973	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35480743	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35754047	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6472297	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs68086555	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7002191	0.87[AMR][1000 genomes]
rs718348	0.83[AMR][1000 genomes]
rs7464980	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7812887	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7822637	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7841468	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7841756	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68257200-68268600	Weak transcription	Primary T cells from cord blood	blood
2	chr8:68261000-68265200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:68261800-68263800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:68263600-68264600	Enhancers	K562	blood

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