Variant report

Variant	rs13275995
Chromosome Location	chr2:141723794-141723795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11775617	0.94[AMR][1000 genomes]
rs11776326	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11778429	0.83[AMR][1000 genomes]
rs11782530	0.87[AMR][1000 genomes]
rs11997760	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11997999	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12679807	0.92[AMR][1000 genomes]
rs13248210	0.89[AMR][1000 genomes]
rs13257652	0.89[AMR][1000 genomes]
rs13262571	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13267958	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13267990	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13268663	0.84[AMR][1000 genomes]
rs13269738	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13271734	0.92[AMR][1000 genomes]
rs13273641	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13274037	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13274739	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13275132	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13278555	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4413764	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4527861	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62519510	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6473097	0.85[AMR][1000 genomes]
rs6473098	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6473099	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6473100	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6473101	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6995111	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6996260	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6997037	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7012638	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7013188	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7013333	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7016593	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7018296	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7821245	0.83[AMR][1000 genomes]
rs7831707	0.89[AMR][1000 genomes]
rs7831788	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7833714	0.90[AMR][1000 genomes]
rs7844386	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv470489	chr2:141688383-141731152	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1014208	chr2:141707558-141790148	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141721400-141728400	Weak transcription	Dnd41	blood

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